objectives the overall goal of this study was to carry out a set of comparative analyses of arsr gene in plasmid r773 and bacterial chromosome from escherichia coli bl-21(de3). methods pdb and ncbi databases and chimera, mega4, clc main workbench software and 3d-jigsaw and embl-ebi servers were applied to perform this study. by using these software and servers, multiple analyses including deter...

the automatic assignment of protein secondary structure from three dimensional coordinates is an essentialstep in the characterization of protein structure.although, the recognition of secondary structures suchas alpha-helices and beta-sheets seem straightforward, but there are many different definitions, eachregarding different criteria. we have developed a newalgorithm for protein helix assig...

in the near future, design of a new generation of drugs targeting proteins will be required. considering the complex bond between the drug and protein, the structure and stability of the target protein should be considered. so far, a series of in vitro investigations have been conducted with the aim of predicting drug-biological medium interactions. in these studies, use of spectroscopic method...

background: rotaviruses (rv) are important viral diarrheal agents in calves. vaccination is an optimum measure to prevent bovine rotaviruses (brv) infection. however, little research on brv vp7 vaccine has been done and currently there is no brv vaccine. objective: to prepare a subunit vaccine of brv and investigate its efficacy. methods: total rna was extracted from ma104 cells infected with b...

background: mushroom tyrosinase a potent candidate in clinical studies known as polyphenol oxidase, is a metaloenzyme from the oxidase superfamily widely distributed from lower to higher life forms. it plays a crucial role in sclerotization of exoskeleton in insects, also responsible for skin pigmentation in mammalians. objective: in this study, after reconstitution of mt by some metal ions, th...

in the process of learning basic biochemistry, as in any other area, much extra class work is required for students before basic concepts, such as those concerning protein structure and properties, are firmly settled. to reach this end we have developed a simple instruction method to teach protein structure in biochemistry courses for medical students. the objectives of this method are to illus...

a thorough recognition of the nature and duties of the genes is based upon having adequate information about the proteins. however, the proteomic projects follow a slow trend; therefore, solving the protein-related problems has become as one of the most important challenges in bio-informatics. consequently, the presence of tools which can enhance the structural recognition, classification, and ...

objective(s) staphylococcus aureus is a foremost source of numerous nosocomial and community acquired infections. antibiotic therapy for vancomycin resistant s. aureus (vrsa) can not promise the eradication of infections. since adhesion is the major route of infections, adhesin based vaccine could suppress s. aureus infections. fibronectin binding protein a (fnbpa) and clumping factor a (clfa) ...

protein structural flexibility is important for catalysis, binding, protein design, and allostery. some simple methods have recently been introduced to compute protein flexibility directly from the protein structure without any mechanical models. for example the atomic mean square displacement (or b-factor) is related to the number of neighboring atoms. the protein structure can be modeled as a...

The automatic assignment of protein secondary structure from three dimensional coordinates is an essential step in the characterization of protein structure. <span style="font...